import os.path import numpy as np from numpy.testing import assert_allclose import pytest from optifik.minmax import thickness_from_minmax from optifik.analysis import smooth_intensities from optifik.io import load_spectrum def test_minmax_ransac(): FOLDER = os.path.join('tests', 'basic') FILE_NAME = '000004310.xy' expected = 1338.35 spectrum_path = os.path.join(FOLDER, FILE_NAME) lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450) smoothed_intensities = smooth_intensities(raw_intensities) r_index = 1.324188 + 3102.060378 / (lambdas**2) prominence = 0.02 result = thickness_from_minmax(lambdas, smoothed_intensities, refractive_index=r_index, min_peak_prominence=prominence, method='ransac', plot=False) assert_allclose(result.thickness, expected, rtol=1e-1) def test_minmax_linreg(): FOLDER = os.path.join('tests', 'basic') FILE_NAME = '000004310.xy' expected = 1338.35 spectrum_path = os.path.join(FOLDER, FILE_NAME) lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450) smoothed_intensities = smooth_intensities(raw_intensities) r_index = 1.324188 + 3102.060378 / (lambdas**2) prominence = 0.02 result = thickness_from_minmax(lambdas, smoothed_intensities, refractive_index=r_index, min_peak_prominence=prominence, method='linreg', plot=False) assert_allclose(result.thickness, expected, rtol=1e-1)