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include peak detection in scheludko

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This commit is contained in:
François Boulogne 2025-05-21 14:43:20 +02:00
parent 56aac01151
commit ccd1f2c1f0
7 changed files with 100 additions and 82 deletions
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26
tests/test_basic.py
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@ -3,13 +3,12 @@ import numpy as np
from numpy.testing import assert_allclose
import pytest
from optifik.analysis import thickness_from_fft
from optifik.analysis import thickness_from_minmax
from optifik.analysis import thickness_from_scheludko
from optifik.analysis import thickness_for_order0
from optifik.fft import thickness_from_fft
from optifik.minmax import thickness_from_minmax
from optifik.scheludko import thickness_from_scheludko
from optifik.scheludko import thickness_for_order0
from optifik.analysis import smooth_intensities
from optifik.analysis import Prominence_from_fft
from optifik.analysis import finds_peak
from optifik.io import load_spectrum
@ -69,14 +68,10 @@ def test_scheludko_4peaks():
prominence = Prominence_from_fft(lambdas=lambdas, intensities=smoothed_intensities, refractive_index=indice, plot=False)
total_extrema, peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=False)
result = thickness_from_scheludko(lambdas, smoothed_intensities,
peaks_min, peaks_max,
refractive_index=indice,
min_peak_prominence=prominence,
plot=False)
assert_allclose(result.thickness, expected, rtol=1e-1)
@ -95,13 +90,9 @@ def test_scheludko_2peaks():
prominence = 0.03
total_extrema, peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=False)
result = thickness_from_scheludko(lambdas, smoothed_intensities,
peaks_min, peaks_max,
refractive_index=indice,
min_peak_prominence=prominence,
plot=False)
assert_allclose(result.thickness, expected, rtol=1e-1)
@ -122,13 +113,10 @@ def test_order0():
prominence = 0.03
total_extrema, peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=False)
result = thickness_for_order0(lambdas, smoothed_intensities,
peaks_min, peaks_max,
refractive_index=indice,
min_peak_prominence=prominence,
plot=False)
assert_allclose(result.thickness, expected, rtol=1e-1)