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include peak detection in scheludko

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This commit is contained in:
François Boulogne 2025-05-21 14:43:20 +02:00
parent 56aac01151
commit ccd1f2c1f0
7 changed files with 100 additions and 82 deletions
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15
tests/test_SV2o5.py
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@ -6,7 +6,6 @@ import pytest
from optifik.scheludko import thickness_from_scheludko
from optifik.io import load_spectrum
from optifik.analysis import smooth_intensities
from optifik.analysis import finds_peak
import yaml
@ -22,22 +21,18 @@ def load():
@pytest.mark.parametrize("spectrum_path, expected", load())
def test_minmax(spectrum_path, expected):
def test_SV2o5(spectrum_path, expected):
lambdas, raw_intensities = load_spectrum(spectrum_path, lambda_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
refractive_index = 1.324188 + 3102.060378 / (lambdas**2)
prominence = 0.02
total_extrema, peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=False)
thickness_scheludko = thickness_from_scheludko(lambdas,
smoothed_intensities,
peaks_min,
peaks_max,
refractive_index)
thickness_scheludko = thickness_from_scheludko(lambdas, smoothed_intensities,
refractive_index=refractive_index,
min_peak_prominence=prominence,
plot=False)
result = thickness_scheludko.thickness
assert_allclose(result, expected, rtol=1e-1)