From cba2a2e1af3bc075968e572eef5d33a119829007 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Fran=C3=A7ois=20Boulogne?= <devel@sciunto.org>
Date: Fri, 20 Jun 2025 16:02:55 +0200
Subject: [PATCH] upd

---
 optifik/minmax.py                             |  6 +-
 tests/spectra/sample3.yaml                    | 72 +++++++++++++++++++
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 create mode 100644 tests/spectraLorene/sample1/sample1.yaml
 rename tests/{spectra/20130425_LLD_SiliconOil => spectraLorene/sample2}/005147.xy (100%)
 rename tests/{spectra/20130425_LLD_SiliconOil => spectraLorene/sample2}/012401.xy (100%)
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 create mode 100644 tests/spectraLorene/sample2/sample2.yaml

diff --git a/optifik/minmax.py b/optifik/minmax.py
index 4c4d7a7..bb17c75 100644
--- a/optifik/minmax.py
+++ b/optifik/minmax.py
@@ -58,7 +58,6 @@ def thickness_from_minmax(wavelengths,
     peaks.sort()
 
     k_values = np.arange(len(peaks))
-    n_over_lambda = refractive_index[peaks][::-1] / wavelengths[peaks][::-1]
 
     if k_values.size < 2:
         # Can't fit if less than two points.
@@ -66,7 +65,10 @@ def thickness_from_minmax(wavelengths,
 
 
     if isinstance(refractive_index, np.ndarray):
-        refractive_index = refractive_index[peaks][::-1]
+        #refractive_index = refractive_index[peaks][::-1]
+        n_over_lambda = refractive_index[peaks][::-1] / wavelengths[peaks][::-1]
+    else:
+        n_over_lambda = refractive_index / wavelengths[peaks][::-1]
 
     if method.lower() == 'ransac':
         residual_threshold = 4e-5
diff --git a/tests/spectra/sample3.yaml b/tests/spectra/sample3.yaml
new file mode 100644
index 0000000..5169981
--- /dev/null
+++ b/tests/spectra/sample3.yaml
@@ -0,0 +1,72 @@
+author: Emmanuelle Rio
+refractive_index: 1.33
+known_thicknesses:
+  012909.xy: 3975
+  013920.xy: 3952
+  014519.xy: 3863
+  016039.xy: 3795
+  018362.xy: 3646
+  019239.xy: 3602
+  020269.xy: 3302
+  020509.xy: 3212
+  020908.xy: 3284
+  021402.xy: 3184
+  022248.xy: 2896
+  022768.xy: 3042
+  023927.xy: 2986
+  024507.xy: 2842
+  025777.xy: 2784
+  026577.xy: 2729
+  027537.xy: 2461
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diff --git a/tests/spectraLorene/sample1/sample1.yaml b/tests/spectraLorene/sample1/sample1.yaml
new file mode 100644
index 0000000..e3cf451
--- /dev/null
+++ b/tests/spectraLorene/sample1/sample1.yaml
@@ -0,0 +1,50 @@
+author: Lorène Champougny
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diff --git a/tests/spectraLorene/sample2/sample2.yaml b/tests/spectraLorene/sample2/sample2.yaml
new file mode 100644
index 0000000..4e6a96c
--- /dev/null
+++ b/tests/spectraLorene/sample2/sample2.yaml
@@ -0,0 +1,7 @@
+author: Lorène Champougny
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