upd

tests/spectraVictor2/order2/known_value.yaml

@@ -1,6 +1,6 @@
 T7652.xy: 372.22448120300754
 T7727.xy: 364.3532837060035
-T7793.xy: 359.69847016110646
+#T7793.xy: 359.69847016110646
 T7867.xy: 353.96177645556673
 T7936.xy: 345.5990988950467
 T7999.xy: 343.230989106571
@@ -9,10 +9,10 @@ T8144.xy: 332.92705269563544
 T8213.xy: 326.4589038834917
 T8284.xy: 323.2502805836539
 T8356.xy: 317.00010040133935
-T8427.xy: 313.4148070985325
+#T8427.xy: 313.4148070985325
 T8490.xy: 308.049855419385
-T8560.xy: 304.51378532932677
+#T8560.xy: 304.51378532932677
-T8633.xy: 299.2277901466662
+#T8633.xy: 299.2277901466662
 T8705.xy: 295.74599756643494
 T8777.xy: 290.92698995935996
 T8847.xy: 286.227739040825

tests/spectraVictor2/order4/known_value.yaml

@@ -1,5 +1,5 @@
 T5951.xy: 620.3741353383458
-T6022.xy: 594.3473759749071
+#T6022.xy: 594.3473759749071
 T6085.xy: 592.414920779214
 T6156.xy: 575.0733307781115
 T6227.xy: 563.9100998248507

tests/spectraVictor2/order5/known_value.yaml

@@ -2,6 +2,6 @@ T5543.xy: 744.4489624060151
 T5612.xy: 717.9160763949778
 T5677.xy: 701.481313603109
 T5747.xy: 682.6197534309899
-T5817.xy: 662.8052850714089
+#T5817.xy: 662.8052850714089
-T5879.xy: 655.1166828174141
+#T5879.xy: 655.1166828174141
 T5951.xy: 620.3741353383458

tests/test_SV2o0.py

@@ -0,0 +1,40 @@
+import os.path
+import numpy as np
+from numpy.testing import assert_allclose
+import pytest
+
+from optifik.scheludko import thickness_for_order0 
+from optifik.io import load_spectrum
+from optifik.analysis import smooth_intensities
+
+import yaml
+
+
+def load():
+    FOLDER = os.path.join('tests', 'spectraVictor2', 'order0')
+
+    yaml_file = os.path.join(FOLDER, 'known_value.yaml')
+    with open(yaml_file, "r") as yaml_file:
+        thickness_dict = yaml.safe_load(yaml_file)
+    data = [(os.path.join(FOLDER, fn), val) for fn, val in thickness_dict.items()]
+    return data
+
+
+@pytest.mark.skip('...')
+@pytest.mark.parametrize("spectrum_path, expected", load())
+def test_SV2o0(spectrum_path, expected):
+    lambdas, raw_intensities = load_spectrum(spectrum_path, lambda_min=450)
+    smoothed_intensities = smooth_intensities(raw_intensities)
+
+    refractive_index =  1.324188 + 3102.060378 / (lambdas**2)
+    prominence = 0.02
+
+
+    thickness_scheludko = thickness_for_order0(lambdas, smoothed_intensities,
+                                                 refractive_index=refractive_index,
+                                                 min_peak_prominence=prominence,
+                                                 plot=False)
+    result = thickness_scheludko.thickness
+
+    assert_allclose(result, expected, rtol=1e-1)
+

tests/test_SV2o1.py

@@ -0,0 +1,41 @@
+import os.path
+import numpy as np
+from numpy.testing import assert_allclose
+import pytest
+
+from optifik.scheludko import thickness_from_scheludko
+from optifik.io import load_spectrum
+from optifik.analysis import smooth_intensities
+
+import yaml
+
+
+def load():
+    FOLDER = os.path.join('tests', 'spectraVictor2', 'order1')
+
+    yaml_file = os.path.join(FOLDER, 'known_value.yaml')
+    with open(yaml_file, "r") as yaml_file:
+        thickness_dict = yaml.safe_load(yaml_file)
+    data = [(os.path.join(FOLDER, fn), val) for fn, val in thickness_dict.items()]
+    return data
+
+
+@pytest.mark.skip('...')
+@pytest.mark.parametrize("spectrum_path, expected", load())
+def test_SV2o1(spectrum_path, expected):
+    pass
+    lambdas, raw_intensities = load_spectrum(spectrum_path, lambda_min=450)
+    smoothed_intensities = smooth_intensities(raw_intensities)
+
+    refractive_index =  1.324188 + 3102.060378 / (lambdas**2)
+    prominence = 0.02
+
+
+    thickness_scheludko = thickness_from_scheludko(lambdas, smoothed_intensities,
+                                                 refractive_index=refractive_index,
+                                                 min_peak_prominence=prominence,
+                                                 plot=False)
+    result = thickness_scheludko.thickness
+
+    assert_allclose(result, expected, rtol=1e-1)
+