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This commit is contained in:
François Boulogne 2025-06-25 10:12:15 +02:00
parent f03e26a3e4
commit 74cea0083d
2996 changed files with 1376 additions and 111 deletions
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29
tests/test_scheludko.py
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@ -1,7 +1,8 @@
import os.path
import pytest
from pathlib import Path
import numpy as np
from numpy.testing import assert_allclose
import pytest
from optifik.scheludko import thickness_from_scheludko
from optifik.scheludko import get_default_start_stop_wavelengths
@ -9,14 +10,16 @@ from optifik.analysis import smooth_intensities
from optifik.io import load_spectrum
@pytest.fixture
def test_data_dir():
return Path(__file__).parent.parent / 'data'
@pytest.fixture
def dataset1():
FOLDER = os.path.join('tests', 'basic')
FILE_NAME = '000005253.xy'
def dataset1(test_data_dir):
spectrum_path = test_data_dir / 'basic' / '000005253.xy'
expected = 777.07
spectrum_path = os.path.join(FOLDER, FILE_NAME)
lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
r_index = 1.324188 + 3102.060378 / (lambdas**2)
@ -91,12 +94,10 @@ def test_scheludko_4peaks(dataset1):
assert_allclose(result.thickness, expected, rtol=1e-1)
def test_scheludko_2peaks():
FOLDER = os.path.join('tests', 'basic')
FILE_NAME = '000006544.xy'
def test_scheludko_2peaks(test_data_dir):
spectrum_path = test_data_dir / 'basic' / '000006544.xy'
expected = 495.69
spectrum_path = os.path.join(FOLDER, FILE_NAME)
lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
r_index = 1.324188 + 3102.060378 / (lambdas**2)
@ -121,19 +122,17 @@ def test_scheludko_2peaks():
assert_allclose(result.thickness, expected, rtol=1e-1)
def test_order0():
FOLDER = os.path.join('tests', 'basic')
FILE_NAME = '000018918.xy'
def test_order0(test_data_dir):
spectrum_path = test_data_dir / 'basic' / '000018918.xy'
expected = 115.33
spectrum_path = os.path.join(FOLDER, FILE_NAME)
lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
r_index = 1.324188 + 3102.060378 / (lambdas**2)
prominence = 0.03
File_I_min = os.path.join('tests', 'spectraVictor2', 'void.xy')
File_I_min = test_data_dir / 'basic' / 'void.xy'
_, intensities_void = load_spectrum(File_I_min, wavelength_min=450)