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This commit is contained in:
François Boulogne 2025-06-25 10:12:15 +02:00
parent f03e26a3e4
commit 74cea0083d
2996 changed files with 1376 additions and 111 deletions
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35
tests/test_SV2o0.py
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@ -1,32 +1,35 @@
import os.path
import pytest
import yaml
from pathlib import Path
import numpy as np
from numpy.testing import assert_allclose
import pytest
from optifik.scheludko import thickness_from_scheludko
from optifik.scheludko import get_default_start_stop_wavelengths
from optifik.io import load_spectrum
from optifik.analysis import smooth_intensities
import yaml
def load(filename):
FOLDER = os.path.join('tests', 'spectraVictor2', 'order0')
test_data_dir = Path(__file__).parent.parent / 'data'
FOLDER = test_data_dir / 'spectraVictor2' / 'order0'
yaml_file = os.path.join(FOLDER, filename)
yaml_file = FOLDER / filename
with open(yaml_file, "r") as yaml_file:
thickness_dict = yaml.safe_load(yaml_file)
data = [(os.path.join(FOLDER, fn), val) for fn, val in thickness_dict.items()]
data = [(FOLDER / fn, val) for fn, val in thickness_dict.items()]
return data
#@pytest.mark.skip('...')
@pytest.mark.parametrize("spectrum_path, expected", load('known_value.yaml'))
def test_SV2o0_small_tol(spectrum_path, expected):
test_data_dir = Path(__file__).parent.parent / 'data'
lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450)
File_I_min = os.path.join('tests', 'spectraVictor2', 'void.xy')
File_I_min = test_data_dir / 'spectraVictor2' / 'void.xy'
_, intensities_void = load_spectrum(File_I_min, wavelength_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
@ -35,12 +38,6 @@ def test_SV2o0_small_tol(spectrum_path, expected):
prominence = 0.020
w_start, w_stop = None, None
#w_start, w_stop = get_default_start_stop_wavelengths(lambdas,
# smoothed_intensities,
# refractive_index=r_index,
# min_peak_prominence=prominence,
# plot=False)
result = thickness_from_scheludko(lambdas,
smoothed_intensities,
refractive_index=r_index,
@ -54,9 +51,11 @@ def test_SV2o0_small_tol(spectrum_path, expected):
@pytest.mark.parametrize("spectrum_path, expected", load('known_value_large_tol.yaml'))
def test_SV2o0_large_tol(spectrum_path, expected):
test_data_dir = Path(__file__).parent.parent / 'data'
lambdas, raw_intensities = load_spectrum(spectrum_path, wavelength_min=450)
File_I_min = os.path.join('tests', 'spectraVictor2', 'void.xy')
File_I_min = test_data_dir / 'spectraVictor2' / 'void.xy'
_, intensities_void = load_spectrum(File_I_min, wavelength_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
@ -65,12 +64,6 @@ def test_SV2o0_large_tol(spectrum_path, expected):
prominence = 0.020
w_start, w_stop = None, None
# w_start, w_stop = get_default_start_stop_wavelengths(lambdas,
# smoothed_intensities,
# refractive_index=r_index,
# min_peak_prominence=prominence,
# plot=False)
result = thickness_from_scheludko(lambdas,
smoothed_intensities,
refractive_index=r_index,