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simplify finds_peak

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This commit is contained in:
François Boulogne 2025-05-21 14:05:08 +02:00
parent 022966608a
commit 56aac01151
6 changed files with 66 additions and 88 deletions
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18
tests/test_SV1.py
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@ -4,9 +4,9 @@ from numpy.testing import assert_allclose
import pytest
from optifik.minmax import thickness_from_minmax
from optifik.analysis import Data_Smoothed
from optifik.analysis import finds_peak
from optifik.io import load_spectrum
from optifik.analysis import smooth_intensities
from optifik.analysis import finds_peak
import yaml
@ -21,17 +21,17 @@ def load():
return data
@pytest.mark.parametrize("spectrum, expected", load())
def test_minmax(spectrum, expected):
raw_intensities = load_spectrum(spectrum)
smoothed_intensities, intensities, lambdas = Data_Smoothed(spectrum)
@pytest.mark.parametrize("spectrum_path, expected", load())
def test_minmax(spectrum_path, expected):
lambdas, raw_intensities = load_spectrum(spectrum_path, lambda_min=450)
smoothed_intensities = smooth_intensities(raw_intensities)
indice = 1.324188 + 3102.060378 / (lambdas**2)
prominence = 0.02
total_extrema, smoothed_intensities, raw_intensities, lambdas, peaks_min, peaks_max = finds_peak(spectrum,
min_peak_prominence=prominence)
total_extrema, peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=False)
thickness_minmax = thickness_from_minmax(lambdas,
smoothed_intensities,