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This commit is contained in:
François Boulogne 2025-06-11 08:36:35 +02:00
parent 1800675fd3
commit 3e5d232e36
50 changed files with 4194 additions and 105 deletions
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97
check.py
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@ -7,8 +7,6 @@ import matplotlib.pyplot as plt
from optifik.analysis import *
from optifik.fft import Prominence_from_fft
from optifik.auto import auto
from optifik import io
plt.rc('text', usetex=True)
@ -20,9 +18,45 @@ plt.rcParams.update({
})
def play():
def play_oder1():
##### Chemin du dossier contenant le spectre #####
from optifik.scheludko import thickness_from_scheludko
DATA_FOLDER = os.path.abspath(os.path.join(os.path.curdir, 'tests', 'basic'))
#SAVE_FOLDER = DATA_FOLDER
# FILE_NAME = '003582.xy' #FFT Exemple -> FFT 3524.51
# FILE_NAME = '000004310.xy' #OOspectro Exemple -> minmax 1338.35
# FILE_NAME = '000005253.xy'#Scheludko 4 pics Exemple -> scheludko ²
# FILE_NAME = '000006544.xy'#Scheludko 2 pics Exemple -> ombre ## Diviser prominence FFT par 2
# FILE_NAME = '000018918.xy' #Scheludko 1 pic max Exemple -> ombre ## Diviser prominence FFT par 2
FILE_NAME = '000004310.xy' #TEST#
spectrum_file = os.path.join(DATA_FOLDER, FILE_NAME)
lambdas, intensities = io.load_spectrum(spectrum_file)
plot_spectrum(lambdas, intensities, title='Raw')
lambdas, intensities = io.load_spectrum(spectrum_file, lambda_min=450)
plot_spectrum(lambdas, intensities, title='Raw, cropped')
smoothed_intensities = smooth_intensities(intensities)
plot_spectrum(lambdas, smoothed_intensities, title='Smoothed')
refractive_index = 1.324188 + 3102.060378 / (lambdas**2)
prominence = 0.025
peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=True)
def play_order1():
##### Chemin du dossier contenant le spectre #####
from optifik.scheludko import thickness_from_scheludko
DATA_FOLDER = os.path.abspath(os.path.join(os.path.curdir, 'tests', 'basic'))
@ -38,7 +72,7 @@ def play():
spectrum_file = os.path.join(DATA_FOLDER, FILE_NAME)
spectrum_file = 'tests/spectraVictor1/T5469.xy' #TEST#
spectrum_file = 'tests/spectraVictor2/order1/T10219.xy' #TEST#
lambdas, intensities = io.load_spectrum(spectrum_file)
plot_spectrum(lambdas, intensities, title='Raw')
@ -49,19 +83,59 @@ def play():
smoothed_intensities = smooth_intensities(intensities)
plot_spectrum(lambdas, smoothed_intensities, title='Smoothed')
prominence = 0.02
refractive_index = 1.324188 + 3102.060378 / (lambdas**2)
prominence = 0.025
peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=prominence,
plot=True)
indice = 1.324188 + 3102.060378 / (lambdas**2)
p, s, w = Prominence_from_fft(lambdas, smoothed_intensities, indice, plot=True)
result = thickness_from_scheludko(lambdas, smoothed_intensities,
refractive_index=refractive_index,
min_peak_prominence=prominence,
plot=True)
print(p)
def play_order0():
##### Chemin du dossier contenant le spectre #####
from optifik.scheludko import thickness_for_order0
DATA_FOLDER = os.path.abspath(os.path.join(os.path.curdir, 'tests', 'basic'))
#SAVE_FOLDER = DATA_FOLDER
# FILE_NAME = '003582.xy' #FFT Exemple -> FFT 3524.51
# FILE_NAME = '000004310.xy' #OOspectro Exemple -> minmax 1338.35
# FILE_NAME = '000005253.xy'#Scheludko 4 pics Exemple -> scheludko ²
# FILE_NAME = '000006544.xy'#Scheludko 2 pics Exemple -> ombre ## Diviser prominence FFT par 2
# FILE_NAME = '000018918.xy' #Scheludko 1 pic max Exemple -> ombre ## Diviser prominence FFT par 2
FILE_NAME = '000004310.xy' #TEST#
spectrum_file = os.path.join(DATA_FOLDER, FILE_NAME)
spectrum_file = 'tests/spectraVictor2/order0/T14787.xy' #TEST#
lambdas, intensities = io.load_spectrum(spectrum_file)
plot_spectrum(lambdas, intensities, title='Raw')
lambdas, intensities = io.load_spectrum(spectrum_file, lambda_min=450)
plot_spectrum(lambdas, intensities, title='Raw, cropped')
smoothed_intensities = smooth_intensities(intensities)
plot_spectrum(lambdas, smoothed_intensities, title='Smoothed')
refractive_index = 1.324188 + 3102.060378 / (lambdas**2)
prominence = .02
peaks_min, peaks_max = finds_peak(lambdas, smoothed_intensities,
min_peak_prominence=p,
min_peak_prominence=prominence,
plot=True)
result = thickness_for_order0(lambdas, smoothed_intensities,
refractive_index=refractive_index,
min_peak_prominence=prominence,
plot=True)
def check_basic():
##### Chemin du dossier contenant le spectre #####
@ -139,4 +213,5 @@ if __name__ == '__main__':
#check_basic()
#check_SV1()
play()
#play()
play_order0()