init

2025-05-21 13:32:32 +02:00 · 2025-05-21 13:32:32 +02:00 · 30a9eef102
commit 30a9eef102
2999 changed files with 1898721 additions and 0 deletions
--- a/optifik/auto.py
+++ b/optifik/auto.py
@ -0,0 +1,82 @@
+import os.path
+
+from .analysis import *
+from .io import load_spectrum
+
+def auto(DATA_FOLDER, FILE_NAME, plot=None):
+
+
+    spectre_file = os.path.join(DATA_FOLDER, FILE_NAME)
+
+    ##### Affichage du spectre brut et récupération des Intesités brutes#####
+
+    raw_intensities = load_spectrum(spectre_file)
+
+    ##### Affichage du spectre lissé #####
+
+    smoothed_intensities, intensities, lambdas = Data_Smoothed(spectre_file)
+
+    ##### Indice Optique en fonction de Lambda #####
+
+    indice =  1.324188 + 3102.060378 / (lambdas**2)
+
+    ##### Determination de la prominence associé #####
+
+    prominence = Prominence_from_fft(lambdas=lambdas, 
+                                     intensities=smoothed_intensities, 
+                                     refractive_index=indice,
+                                     plot=plot)
+
+    prominence = 0.03
+    ##### Find Peak #####
+
+    total_extrema, smoothed_intensities, raw_intensities, lambdas, peaks_min, peaks_max = finds_peak(spectre_file,
+                                                                                                     min_peak_prominence=prominence,
+                                                                                                     plot=plot)
+
+    ##### Epaisseur selon la methode #####
+
+    #thickness_FFT = thickness_from_fft(lambdas,smoothed_intensities,refractive_index=1.33)
+
+    if total_extrema > 15 and total_extrema > 4:
+        print('Apply method FFT')
+        thickness_FFT = thickness_from_fft(lambdas,smoothed_intensities,
+                                           refractive_index=indice,
+                                           plot=plot)
+        thickness = thickness_FFT.thickness
+        print(f'thickness: {thickness:.2f} nm')
+
+
+    if total_extrema <= 15 and total_extrema > 4:
+        print('Apply method minmax')
+        thickness_minmax = thickness_from_minmax(lambdas,smoothed_intensities,
+                                                 refractive_index=indice,
+                                                 min_peak_prominence=prominence,
+                                                 plot=plot)
+        thickness = thickness_minmax.thickness
+        print(f'thickness: {thickness:.2f} nm')
+
+    if total_extrema <= 4 and total_extrema >= 2:  #& 2peak minimum:
+        print('Apply method Scheludko')
+        thickness = thickness_from_scheludko(lambdas, raw_intensities, smoothed_intensities,
+                                             peaks_min, peaks_max,
+                                             refractive_index=indice,
+                                             plot=plot)
+        print(f'thickness: {thickness:.2f} nm')
+
+    if total_extrema <= 4 and len(peaks_max) == 1 and len(peaks_min) == 0 : #dans l'ordre zéro !
+        print('Apply method ordre0')
+
+        thickness = thickness_for_order0(lambdas, raw_intensities, smoothed_intensities,
+                                             peaks_min, peaks_max,
+                                             refractive_index=indice,
+                                             plot=plot)
+
+        print(f'thickness: {thickness:.2f} nm')
+
+    if total_extrema <= 4 and len(peaks_max) == 0 and (len(peaks_min) == 1 or  len(peaks_min) == 0):
+        #& 1peak min ou zéro:
+        thickness = None
+        print('Zone Ombre')
+
+